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Creators/Authors contains: "Abbott, John"

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  1. Abstract Mountains and islands provide an opportunity for studying the biogeography of diversification and population fragmentation. Aotearoa (New Zealand) is an excellent location to investigate both phenomena due to alpine emergence and oceanic separation. While it would be expected that separation across oceanic and elevation gradients are major barriers to gene flow in animals, including aquatic insects, such hypotheses have not been thoroughly tested in these taxa. By integrating population genomic from subgenomic Anchored-Hybrid Enrichment sequencing, ecological niche modeling, and morphological analyses from scanning-electron microscopy, we show that tectonic uplift and oceanic vicariance are implicated in speciation and population structure in Kapokapowai (Uropetala) dragonflies. Although Te Moana o Raukawa (Cook Strait) is likely responsible for some of the genetic structure observed, speciation has not yet occurred in populations separated by the strait. We find that the altitudinal gradient across Kā Tiritiri-o-te-Moana (the Southern Alps) is not impervious, but it significantly restricts gene flow between the aforementioned species. Our data support the hypothesis of an active colonization of Kā Tiritiri-o-te-Moana by the ancestral population of Kapokapowai, followed by a recolonization of the lowlands. These findings provide key foundations for the study of lineages endemic to Aotearoa. 
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  2. Abstract The striped emeralds (SomatochloraSelys) are a Holarctic group of medium‐sized metallic green dragonflies that mainly inhabit bogs and seepages, alpine streams, lakes, channels and lowland brooks. With 42 species they are the most diverse genus within Corduliidae (Odonata: Anisoptera). Systematic, taxonomic and biogeographic resolution withinSomatochloraremains unclear, with numerous hypotheses of relatedness based on wing veins, male claspers (epiproct and paraprocts) and nymphs. Furthermore,Somatochlora borisiwas recently described as a new genus (Corduliochlora) based on 17 morphological characters, but its position with respect toSomatochlorais unclear. We present a phylogenetic reconstruction ofSomatochlorausing Anchored Hybrid Enrichment (AHE) sequences of 40/42Somatochloraspecies (includingCorduliochlora borisi). Our data recover the monophyly ofSomatochlora, withC. borisirecovered as sister to the remainingSomatochlora. We also recover three highly supported clades and one of mixed support; this lack of resolution is most likely due to incomplete lineage sorting, third‐codon position saturation based on iterative analyses run on variations of our dataset and hybridization. Furthermore, we constructed a dataset for all species based on 20 morphological characters from the literature which were used to evaluate phylogenetic groups recovered with molecular data; the data support the validity ofCorduliochloraas a genus distinct fromSomatochlora. Finally, divergence time estimation and biogeographic analysis indicateSomatochloraoriginated in the Western North Hemisphere during the Miocene, with three dispersal events to the Eastern North Hemisphere (11, 7 and 5 Ma, respectively) across the Beringian Land Bridge. 
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    Free, publicly-accessible full text available February 14, 2026
  3. Neurocordulia, commonly called shadowdragons, are crepuscular dragonflies, flying mainly at dusk. The genus comprises seven species, which occur across the eastern part of Canada and the United States. Here, we used targeted enrichment probes to sequence ~1000 loci for all specimens of each species, allowing for the first phylogenetic assessment of the genus. Additionally, we collected individuals of N. yamaskanensis from a population in Ontario, Canada, and used whole genome resequencing to estimate population structure. Beyond broadly reconstructing the phylogeny of Neurocordulia, we provided a comprehensive bibliography review of past research on the genus, a key to the species, and distribution models for each species. 
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    Free, publicly-accessible full text available January 31, 2026
  4. Free, publicly-accessible full text available December 1, 2025
  5. Free, publicly-accessible full text available November 1, 2025
  6. Mountains and islands provide an opportunity for studying the biogeography of diversification and population fragmentation. Aotearoa (New Zealand) is an excellent location to investigate both phenomena due to alpine emergence and oceanic separation. While it would be expected that separation across oceanic and elevation gradients are major barriers to gene flow in animals, including aquatic insects, such hypotheses have not been thoroughly tested in these taxa. By integrating population genomic from sub-genomic Anchored-Hybrid Enrichment sequencing, ecological niche modeling, and morphological analyses from scanning-electron microscopy, we show that tectonic uplift and oceanic vicariance are implicated in speciation and population structure in Kapokapowai (Uropetala) dragonflies. Although Te Moana o Raukawa (Cook Strait), is likely responsible for some of the genetic structure observed, speciation has not yet occurred in populations separated by the strait. We find that the altitudinal gradient across Kā Tiritiri-o-te-Moana (the Southern Alps) is not impervious but it significantly restricts gene flow between aforementioned species. Our data support the hypothesis of an active colonization of Kā Tiritiri-o-te-Moana by the ancestral population of Kapokapowai, followed by a recolonization of the lowlands. These findings provide key foundations for the study of lineages endemic to Aotearoa. 
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    Free, publicly-accessible full text available November 26, 2025
  7. Abstract Odonata is a midsized insect order (~6420 species) containing 3 suborders: Anisoptera (dragonflies, 3,120 species), Zygoptera (damselflies, ~3,297 species), and the intermediate Anisozygoptera (~3 species). In this review of the suborder Zygoptera, we provide a brief overview of their biology, ecology, and natural history. We also review the current state of their systematics and phylogenetics, highlighting remaining higher-level classification (eg family, superfamily) issues to address. Lastly, we will emphasize areas that are still in need of exploration which would greatly improve our understanding of the group. 
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  8. Meloro, Carlo (Ed.)
    More than tools for managing physical and digital objects, museum collection management systems (CMS) serve as platforms for structuring, integrating, and making accessible the rich data embodied by natural history collections. Here we describe Arctos, a scalable community solution for managing and publishing global biological, geological, and cultural collections data for research and education. Specific goals are to: (1) Describe the core features and implementation of Arctos for a broad audience with respect to the biodiversity informatics principles that enable high quality research; (2) Highlight the unique aspects of Arctos; (3) Illustrate Arctos as a model for supporting and enhancing the Digital Extended Specimen concept; and (4) Emphasize the role of the Arctos community for improving data discovery and enabling cross-disciplinary, integrative studies within a sustainable governance model. In addition to detailing Arctos as both a community of museum professionals and a collection database platform, we discuss how Arctos achieves its richly annotated data by creating a web of knowledge with deep connections between catalog records and derived or associated data. We also highlight the value of Arctos as an educational resource. Finally, we present the financial model of fiscal sponsorship by a nonprofit organization, implemented in 2022, to ensure the long-term success and sustainability of Arctos. 
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  9. Sparrow, David (Ed.)
    Species distribution models (SDMs) were created for 509 Nearctic and 402 Palaearctic species of dragonflies and damselflies (Odonata). Species occurrence data were assembled by reviewing databases of specimens held by significant Odonata repositories and through an extensive search of literature references for the whole of the Nearctic and Palaearctic (excluding China and the Himalayan region). Species were categorized as forest-dependent or non-forest-dependent (Nearctic only), as lentic or lotic-dependent, and according to conservation status. Predicted distributions were stacked for all species across their entire ranges, including areas outside of the Nearctic and Palaearctic. Species richness and corrected weighted endemism (CWE) were then calculated for each grid cell. We found a pattern of greater species richness in the eastern portion of the Nearctic, which can be explained by the higher aquatic habitat diversity at micro and macroscales east of the Rocky Mountains, promoting niche partitioning and specialization. In the Nearctic region, the southeastern US has the highest number of endemic species of dragonflies and damselflies; this degree of endemism is likely due to glacial refuges providing a foundation for the evolution of a rich and unique biota. In the Palaearctic, these maps show a clear pattern of decreasing diversity longitudinally, with species numbers dropping in the eastern half of Europe and remaining low throughout a large part of Russia, then increasing again towards Russia’s Far East and Korea. Areas with a high diversity of species assessed as threatened on the IUCN red list are largely restricted to the Mediterranean, Southwest Asia, and Japan, with clear hotspots found in the Levant and the southern half of Japan. 
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  10. Abstract Museum collections house millions of objects and associated data records that document biological and cultural diversity. In recent decades, digitization efforts have greatly increased accessibility to these data, thereby revolutionizing interdisciplinary studies in evolutionary biology, biogeography, epidemiology, cultural change, and human-mediated environmental impacts. Curators and collection managers can make museum data as accessible as possible to scientists and learners by using a collection management system. However, selecting a system can be a challenging task. Here, we describe Arctos, a community solution for managing and accessing collections data for research and education. Specific goals are to: (1) Describe the core elements of Arctos for a broad audience with respect to the biodiversity informatics principles that enable high quality research; (2) Highlight the unique aspects of Arctos; (3) Illustrate Arctos as a model for supporting and enhancing the Digital Extended Specimen; and (4) Emphasize the role of the Arctos community for improving data discovery and enabling cross-disciplinary, integrative studies within a sustainable governance model. In addition to detailing Arctos as both a community of museum professionals and a collection database platform, we discuss how Arctos achieves its richly annotated data by creating a web of knowledge with deep connections between catalog records and derived or associated data. We also highlight the value of Arctos as an educational resource. Finally, we present a financial model of fiscal sponsorship by a non-profit organization, implemented in 2022, to ensure the long-term success and sustainability of Arctos. We attribute Arctos’ longevity of nearly three decades to its core development principles of standardization, flexibility, interdisciplinarity, and connectivity within a nimble development model for addressing novel needs and information types in response to changing technology, workflows, ethical considerations, and regulations. 
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